ORIGINALPAPER
CharacterizationandchromosomallocationofPm40incommonwheat:anewgeneforresistancetopowderymildewderivedfromElytrigiaintermedium
P.G.LuoÆH.Y.LuoÆZ.J.ChangÆH.Y.ZhangÆM.ZhangÆZ.L.Ren
Received:19May2008/Accepted:6January2009/Publishedonline:5February2009ÓSpringer-Verlag2009
AbstractPowderymildew,causedbyBlumeriagraminisf.sp.tritici,isaverydestructivewheat(Triticumaestivum)disease.ResistancewastransferredfromElytrigiainter-mediumtocommonwheatbycrossingandbackcrossing,andlineGRY19,thatwassubsequentlyselected,possessedasingledominantgeneforseedlingresistance.Fivepoly-morphicmicrosatellitemarkers,Xgwm297,Xwmc335,Xwmc364,Xwmc426andXwmc476,onchromosomearm7BS,weremappedrelativetothepowderymildewresis-tancelocusinanF2populationofMianyang11/GRY19.ThelociorderXwmc426–Xwmc335–Pm40–Xgwm297–Xwmc364–Xwmc476,with5.9,0.2,0.7,1.2and2.9cMgeneticdistances,wasconsistentwithpublishedmaps.TheresistancegenetransferredfromElytrigiaintermediumintowheatlineGRY19wasnovel,andwasdesignatedPm40.Thecloseflankingmarkerswillenablemarkerassistedtransferofthisgeneintowheatbreedingpopulations.
P.G.LuoandH.Y.Luocontributedequallytothework.CommunicatedbyE.Guiderdoni.
P.G.LuoÁH.Y.LuoÁH.Y.ZhangÁM.ZhangÁZ.L.Ren(&)
StateKeyLaboratoryofPlantBreedingandGenetics,SichuanAgriculturalUniversity,Ya’an,Sichuan625014,China
e-mail:auh5@sicau.edu.cn;renzllab@sicau.edu.cnP.G.LuoÁZ.L.Ren
SchoolofLifeScienceandTechnology,
UniversityofElectronicScienceandTechnologyofChina,Chengdu,Sichuan610054,ChinaZ.J.Chang
InstituteofCropGenetics,
ShanxiAcademyofAgriculturalScience,Taiyuan,Shanxi030031,China
Introduction
Powderymildew,causedbyBlumeriagraminisf.sp.tri-tici,isoneofthemostdestructivefoliardiseasesofwheat(Triticumaestivum)inChina(ZhuangandLi1993).InsouthwestChina,powderymildewprobablyexceedsstriperustasthemostdamagingdisease,especiallyundercoolerconditionswithhighinputsofirrigationandnitrogenousfertilizer.Race-specificresistancetopowderymildewisusuallyshort-lived,especiallywhenasingleresistancegeneisdeployedoverawidearea,andongoingsearchesarerequiredtoidentifynewsourcesofresistanceforuseinbreedingprograms.Morethan60resistancealleleslocatedat37lociforresistancetopowderymildew(Pm1–Pm39)havebeenidentifiedanddesignatedinwheat(McIntoshetal.1998,2006;Mirandaetal.2007).Amongthem,25werederivedfromTriticumaestivum,sixfromT.turgi-dum,twofromT.monococcum,twofromAegilopsspeltoides,onefromA.longissina,onefromA.ovata,onefromA.umbellulata,twofromT.timopheevi,fourfromSecalecereale,onefromHaynaldiavillosaandfourfromA.tauschii.NoresistancegenecamefromElytrigiain-termedium(2n=42;E1E1E2E2StSt),agrassrelativeofwheatreportedtobeimmunetowheatpowderymildew(Wangetal.2000a).Thisspeciesiseasilyhybridizedwithwheatandthereforeisofpotentialvalueforwheatimprovement.Variousdisomicadditionlinesandtranslo-cationlinesresistanttopowderymildewhavebeenproducedinChina(LiandWang2002;Linetal.2005).ThewheatderivativeYU25isimmunetopowderymildew.GeneticanalysisshowedthatresistanceinYU25iscon-trolledbytwogenes(Maetal.2007).Thelocationofthesegenesonchromosomesandtheidentificationofmarkerscloselylinkedtothemshouldbebeneficialtotheirutili-zationinwheatbreedingprograms.
123
1060Molecularmarkersarenowwidelyusedforgenetagging,genemapping,andothergeneticsresearchbecausetheyarenotinfluencedbyenvironmentalcondi-tionsandgrowthstage.Molecularmarkerstightlylinkedtogenesconferringtraitsofinterestcanbeusedinmarker-assistedselection(MAS)toimprovetheefficiencyofconventionalplantbreeding(Guptaetal.1999).Amongthevariousmolecularmarkersystemscurrentlyavailabletowheatworkers,microsatellites,orsimplesequencerepeats(SSR),arethemostwidelyutilizedandseveral
microsatellitemapsofwheathavebeenreported(Ro
¨deretal.1998;Stephensonetal.1998;Pestsovaetal.2000;Guptaetal.2002;Somersetal.2004).SSRlociareevenlydistributedalongthechromosomemapsprovidingexcel-lentcoverageofthewheatgenome.SSRmarkersweresuccessfullyusedtotaganumberofpowderymildewresistancegenes(Huangetal.2000;Jarveetal.2000;Liuetal.2002;Xieetal.2003,2004;Zhuetal.2005;Mirandaetal.2006,2007).
Thepurposesofthepresentstudyweretousemicro-satellitemarkerstocharacterizeandlocateamildewresistancegene,alreadyintrogressedintowheatfromElytrigiaintermedium.MaterialsandmethodsPlantmaterials
WheatlinesorcultivarsGRY19,YU24,YU25,CM107,TAI7047,Taiyuan768and76(64),andE.intermediumwereusedinpowderymildewresponsetests.Chuanmai107(CM107)asmaternalparentwascrossedwithoctoploidTrititrigiaTAI7047,derivedfromtheinterspecificcrossT.aestivumcv.Taiyuan768/Elytrigiaintermedium//T.aestivumline76(64).Twowheatlines,Yuan24(YU24)andYuan25(YU25)selectedfromanF5populationofthecrossexhibitedimmuneresponsestopowderymildewoverseveralyearsofobservation.GRY19,selectedfromanF4populationofMianyang11(MY11)/YU25,isalsoimmune.F1plants,reciprocalbackcrossF1sandF2s,andF3families(about50seedlingsperfamilypertest)andreciprocalBCF2populationsderivedfromthecrossMY11/GRY19,wereusedingeneticstudies.ChancellorandSy95-7wereusedassusceptiblecontrols.Pathogenmaterials
AnisolateoftheprevailinglocalB.graminisf.sp.tritici(Bgt)race15(Xieetal.2003)wasusedintheseedlingstageassays.InoculationswereperformedbydustingconidiafromsporulatingseedlingsofChancellorontothetestseedlings.Infectiontypes(ITs)producedonindividual
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TheorApplGenet(2009)118:1059–1064
plantsorlineswererecordedabout2weeksafterinocu-lation.AlthoughrecordingsareusuallybasedonasixITscaleonlyplantswithIT0(immune)orIT4(Xieetal.2003)wereobservedontheparentalsegregatingmaterials.
PreparationofgenomicDNA
TotalDNAwasextractedfrom5-weeks-oldseedlingleavesaccordingtothemethodofLuoetal.(2004).PCRamplificationandproductanalysis
GenomicDNAofparentsandindividualF2plantsderivedfromMY11/GRY19wereusedformolecularanalysis.SSRmarkerslinkedtotheresistancegenewereidentifiedbybulkedsegregantanalysis(BSA).PCRwereperformedinvolumesof25llinaMJRESEARCH(PTC-200)thermocycler,usingpubliclyavailableGWM(Bryanetal.
1997;Ro
¨deretal.1998)andWMC(Guptaetal.2002)primerpairs.SSRanalysisfollowedtheprocedureofRo
¨deretal.(1998)withminormodifications.PCRfol-lowedtheprogramdescribedbyLuoetal.(2008).EachPCRproductwasmixedwith3llofloadingbuffer(98%formamide,10mMEDTA,pH8.0,0.25%bromo-phenolblue,and0.25xylenecyanol),denaturedat95°Cfor5minandchilledonice.Sixmicrolitersofeachsamplewasloadedon6%polyacrylamide(19:1acrylamide:Bis,8Mureaand19TBE[90mMtris-borate(pH8.3),2mMEDTA]gels,whichwererunat80Wforapproximately1.5h,andvisualizedbysilverstaining(Bassametal.1991).
Statisticalanalysisandlinkageanalysis
Thegoodnessoffitofsegregationdatawithhypothesizedratioswasdeterminedbychi-squaredtestsusingSigmaplot2001software(SPSSInc.,Chicago,IL,USA).LinkagedistancesbetweenmarkersandtheresistancegeneweredeterminedusingMAPMAKER3.0(Landeretal.1987).MarkerswereacceptedataLODthresholdof3.0,andthelinkagemapwasconstructedbythemethodofLincolnetal.(1992).MapdistanceswerebasedontheKosambifunction(Kosambi1944).
Results
Powderymildewresponses
Infectiontypesproducedbyninewheatlines,octoploidTritelyitrigiaTAI7047,andE.intermediumafter
TheorApplGenet(2009)118:1059–1064inoculationwithBgtrace15showedthatGRY19,YU24,YU25,TAI7047,E.intermediumwereimmune(IT0),andthatMY11,CM107,76(64),Taiyuan768,Chancellor,andSy95-7weresusceptible(IT4).ThisconfirmedthatoneormoregenesforresistancehadbeentransferredfromE.intermediumintowheatlinesGRY19,YU24andYU25.Responsesegregationandinheritance
FormappingtheresistancegeneinGRY19usingmolec-ularmarkers,F1plants,396F2individuals,and213F3familiesfromthecrossMY11/GRY19,161BC1F2familiesfromMY11/GRY19//MY11,and132BC1F2familiesfromMY11/GRY19//GRY19wereinoculatedwithrace15.F1plantswereasresistantasGRY19indicatingthatresistancewasdominant.TheF2populationsegregated294resistant:102susceptible(v23:1=0.121,P[0.7),andasshowninTable1theF3linessegregated1homozygousresistant,2segregating:1homozygoussusceptible,F2linesfromthebackcrosstoMY11segregated1segregating:1homozy-goussusceptible,andthebackcrosstoGR19segregated1homozygousresistant:1segregating.TheseresultsclearlyshowedthatGRY19carriedasingledominantgeneforpowderymildewresistance.
Identificationofmicrosatellitemarkerslinkedtothepowderymildewresistancegene
Atotalof238(34.3%)of683microsatelliteprimerpairs,mappedtowheatchromosomesamplifiedclearbands,andgavepolymorphismsbetweenMY11andGRY19.Amongthem,Xgwm297,Xwmc335,Xwmc364,Xwmc426andXwmc476amplifiedidenticalbandsintheresistant(BR)F2bulksandGRY19,andcontrastingbandsinthesusceptible(BS)F2bulksandMY11(Fig.1),indicatingthatthesemarkerswerelinkedwithPm40.Becauseallfiveprimerpairs,previouslylocatedonwheatchromosomearm7BS,amplifiedonlysinglebands,Pm40waslikelyalsolocatedonthatchromosomearm.TherelationshipsbetweenthepowderymildewresistanceresponsegenotypesandmoleculargenotypesareshowninTable2.Eachmarkerlocusexhibiteda1:2:1segregationratio.Thelocusorder
Table1ResponsesofF3linesandreciprocalbackcrossF2popula-tionsofMY11//GRY19toBgtrace15Cross
GenerationResponsesExpectedv2a(families)HRSegHSratioMY11/GRY19F356
106511:2:10.239MY11/GRY19//
BC1F27883
1:10.078MY11MY11/GRY19//BC1F26270
1:1
0.242
GRY19
aValuesforsignificanceatP=0.05are3.84(1df),5.99(2df)
1061
Fig.1AmplifiedPCRproductswithSSRprimerpairsXgwm297,Xwmc335,Xwmc364,Xwmc426andXwmc476inpolyacrylamidegels.P1GRY19,Brresistantbulk,RresistantF2plants,P2MY11,Bssusceptiblebulk,SsusceptibleF2plants,Mmarker(with100bpladder);asteriskheterozygousloci
Table2MarkerandpowderymildewresponsegenotypesfortheMY11/GRY19F2populationMarker
ResistanceMarkergenotypeTotal
genotype
AHB
Xgwm297RR
55
156Rr1051106rr1
5051Total55107
51213v21:2:1
¼0:155;P=0.925;linkedwithPm40(0.7cM)
Xwmc335RR
56
56Rr105
1106rr5151Total56105
52
213v21:2:1
¼0:192;P=0.908;linkedwithPm40(0.2cM)
Xwmc364RR
56
56Rr104
2106rr44751Total
5610849
213v21:2:1¼0:502;P=0.778;linkedwithPm40(1.9cM)
Xwmc426RR
53356Rr3958106rr84351Total
56106
51213v21:2:1¼0:239;P=0.887;linkedwithPm40(6.1cM)
Xwmc476RR
5656Rr4993106rr34851Total
60
102
51
213v21:2:1¼0:141;P=0.565;linkedwithPm40(4.8cM)
AhomozygousfortheGRY19allele,Hheterozygous,Bhomozygous
fortheMY11allele
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1062wasXwmc426–Xwmc335–Pm40–Xgwm297–Xwmc364–Xwmc476,withgeneticdistancesof5.9,0.2,0.7,1.2,and2.9cM,respectively(Fig.2).
Discussion
Originoftheresistancegeneanditsmodeofinheritance
Intermediatewheatgrasscanbeusedasapotentialsourceofresistancetowheatpowderymildew(Wangetal.2000a,b).GRY19isaderivativeofthatspeciesandallcommonwheatparentsinvolvedinitspedigreewerehighlysusceptibleindicatingthattheresistanceshouldhavecomefromE.intermedium.Geneticsegregationdataclearlyshowedthepresenceofasingledominantgeneforresistance.Sincenocurrentformallynamedwheatgeneforpowderymildewresistanceisderivedfromthisdonorspeciestheresistancegenemustbenovel.Chromosomallocationofthepowderymildewresistancegene
ThemicrosatellitemarkersXgwm297,Xwmc335,Xwmc364,Xwmc426andXwmc476,earlierplacedonchromosome7BS(Ro
¨deretal.1998;Guptaetal.2002;Somersetal.2004)123
TheorApplGenet(2009)118:1059–1064
werecloselylinkedwiththepowderymildewresistancegeneinGRY19.Thegeneticdistancesbetweenfourofthemarkers(exceptforXwmc426)andtheresistancegenewerelessthan5cM(Table2andFig.2),makingthemusefulformolecularMAS,especiallytheflankingXwmc335andXgwm297allelesseparatedby\\1cM.Somersetal.(2004)reportedthesamemarkersinthesequenceXwmc426–Xwmc335–Xgwm297–Xwmc476/Xwmc364withseparatingintervalsof5.1,0.4and2.7cM,respectively.BoththeorderanddistancesfortheselocicloselyagreedwiththoseinFig.2.Theuniquechro-mosomallocationsuggestedthattheresistancegeneforpowderymildewisnewlocusanditisnamedPm40.Thetransferredresistanceappearstobepresentinacryptictranslocation
Chromosometranslocationisacommonandusefulmethodfortransferringaliengenesfromwildrelativestocommonwheat.Manyalientranslocations,despitecarryingpoten-tiallyusefulgenes,havequestionablevalueinwheatimprovement,becausetheoftenlargetransferredchromo-somesegmentsdonotadequatelycompensateforthewheatgenestheyreplace,orcarryadditionalgenesconferringundesirabletraits.However,inafewinstances,traitsofinterestweretransferredtorecipientgenotypeswithoutdetectablecytologicalorgeneticchanges(Multanietal.1994;RenandZhang1997;Dongetal.2004;Kuraparthyetal.2007).Wheatprimersdidnotspantheresistancegene.WheatSSRprimersyieldedPCRproductsonwheatgeno-typeGRY19andSSRmarkerlociclosedflankedthePm40withoutsignificantchangesintheorderanddistancewhencomparedtotheconsensusgeneticmap.PreviouslystudyshowedthatYU24anditssisterselection,YU25,weregenetically(2n=42,21II)andagronomicallyuniform(Maetal.2007).TheresistancegeneinGRY19behavedasanormalMendelianunit.Moreover,wecouldnotdetectinsituhybridizationsignalsusingE.intermediumgenomicDNAasaprobe(datanotshown).ThispersuadedustoconcludethatwheatgenotypeGRY19doesnothavealargealienchro-mosomalsegment.ThustheonlyevidencethatGRY19carriesresistancefromE.intermediumispedigree.GeneticanalysisshowedthatYU25carriestwogeneticallyinde-pendentgenesforresistancetopowderymildew(Maetal.2007),andthatYU24probablycarriesthesametwogenes(unpublisheddata).Oneofthegenesconfersimmunity(IT0),andtheother,anintermediateresponse.GRY19appar-entlyinheritedonlytheimmunityfactor.ProspectsofPm40inwheatresistancebreedingprograms
InChina,especiallysouthwestChina,powderymildewisthemostcommonwheatdiseaseduetothetemperaterainy
TheorApplGenet(2009)118:1059–1064environmentduringthewheatgrowingseason(ZhuangandLi1993).Inrecentyears,powderymildewlevelshaveincreasedbecausealmostallpreviouslydeployedresistancesarenolongereffective(Liuetal.2002).Thesingleresistancegenelocatedinchromosome7BSinGRY19showednormalinheritance.Group7chromosomesinwheatarehighlytoleranttothepresenceofalienchromatinasevidencedbytheobservationthathomologousgroup7nullisomics(especiallynulli-7B)arethemostnormalofallwheatnull-isomics.Hencethelossorgain(orreplacement)ofgeneticmaterialinthischromosomeislikelytohaveminimaldet-rimentaleffects.ThecloselylinkedSSRmarkersandthedefinedlocationofPm40shouldaccelerateitsincorporationintocommercialcultivarsbyMAS.Therefore,thereisahighlikelihoodthatthepresentmaterialcanbeutilizedbybreeders,especiallywhenitisrealizedthattheonlycurrentlyeffectivehighlyresistantalternatesourceofresistanceinsouthwesternChinaisPm21whichisalsoderivedfromanaliensource,namelyH.villosa.
AcknowledgmentsFinancialsupportwasprovidedbytheNationalNaturalScienceFoundationofChina(30730065),theFokYingTungEducationsFoundation(No.111030),ChinaPostdoctoralScienceFoundation(No.0070411148)andtheSpecificFoundationofAgronomy(No.nyhyzx07-048).WearegratefultoDrR.A.McIntosh,UniversityofSydney,Australia,foracriticalreviewofadraftofthispaper.
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